PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr001036.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 271aa    MW: 30331.1 Da    PI: 9.5659
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr001036.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.1e-067296126
                 --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                 ykt+lCr f+  G C+ G rC+FaHg
  Pbr001036.1 72 YKTKLCRKFQM-GCCSSGQRCSFAHG 96
                 9**********.*************9 PP

2zf-CCCH27.84.2e-09132155326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                   ++Cr f+r GtC+yGd+C+F H+
  Pbr001036.1 132 VRICRSFFRWGTCSYGDKCRFRHV 155
                  799******************885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.6E-1369101IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-869101IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5967198IPR000571Zinc finger, CCCH-type
SMARTSM003560.00727197IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-4129156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.723129157IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-6131155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6132158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-7133155IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MSTPLPTQQF FARYLESVDN GRQIKHQIPT EEKEIKAQSD IKSQAFKKPR TSEAVSNSNA  60
ASGQNKMLPS YYKTKLCRKF QMGCCSSGQR CSFAHGTSDL RRTLRDAQGM ETENGNLARR  120
TWNGDHGSSN GVRICRSFFR WGTCSYGDKC RFRHVNPENI RDSSFTSIST AGGSAQFDCK  180
KSLELRKLCG YTTPECGSVQ ANSLMTYTRG NNASNRRMGV ATAYKHGQST QCNLEWNKLE  240
KLSRIYADWI EDMPLLHGSS SKVECYSSLV *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009362553.10.0PREDICTED: zinc finger CCCH domain-containing protein 28-like
TrEMBLM5XE532e-58M5XE53_PRUPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15275712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.13e-12C3H family protein